SNP Profiles of IMC 14   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CTAGCTTTAACCTTCTCTAAAACTAGCT
1._RUQ_1634
_AGTT___GT____CTAA_
2._GC-03-030-3-09
CCAGTTTT_TT_CCCCAAGGCTAA_
3._IMC_14
CCAGTTTT_TT_CCCCAAGGCTAA_
4._GC-03-030-3-09
CCAGTTTT_TT_CCCCAAGGCTAATT
5._GC-03-030-3-09
CCAGTTTT_TT_CCCCAAGGCTAATT
6._IMC_14
CCAGTTTT_TT_CCCCAAGGCTAATT
7._IMC_14
CCAGTTTT_TT_CCCCAAGGCTAATT
8._IMC_14
CCAGTTTTCCTTGTCC_AAGGCTAATT
9._IMC_14
CCAGTTTTCCTT_CCCCAAGGCTAATT
10._GC-03-030-3-09
CCAGTTTTCCTT_CCCCAAGGCTAATT
11._GC-03-030-3-09
CCAGTTTTCCTTGTCCCCAAGGCTAATT
12._GC-03-030-3-09
CCAGTTTTCCTTGTCCCCAAGGCTAATT
13._IMC_14
CCAGTTTTCCTTGTCCCCAAGGCTAATT
14._IMC_14
CCAGTTTTCCTTGTCCCCAAGGCTAATT
15._IMC_14
CCAGTTTTCCTT_CCCCAAGGCTAATT
16._IMC_14
CCAGTTTTCCTT_CCCCAAGGCTAATT
17._GC-03-030-3-09
CCAGTTTTCCTT_CCCCAAGGCTAATT
18._GC-03-030-3-09
CCAGTTTTCCTT_CCCCAAGGCTAATT
19._IMC_14
CCAGTTTTCCTTGTCCCCAAGGCTAATT
20._GC-03-030-3-09
CCAGTTTTCCTTGTCCCCAAGGCTAATT
21._GC-03-030-3-09
CCAGTTTTCCTTGTCCCCAAGGCTAATT
22._GC-03-030-3-09
CCAGTTTTCCTTGTCCCCAAGGCTAATT
23._GC-03-030-3-09
CCAGTTTTCCTTGTCCCCAAGGCTAATT
24._IMC_14
CCAGTTTTCCTTGTCCCCAAGGCTAATT
25._IMC_14
CCAGTTTTCCTTGTCCCCAAGGCTAATT
26._IMC_14
CCAGTTTTCCTTGTCCCCAAGGCTAATT
27._IMC_14
CCAGTTTTCCTTGTCCCCAAGGCTAATT
28._GC-04-054-3-18
CCAGTTTTCCTTGTCCCCAAGGCTAATT
29._RUQ_1634
______GT_CC_GG_AA_
30._GC-03-30-3-9
GGAGAAAACCAAAA__AAGGAGAAAA
31._RUQ_1634
GGAGAAAACCAAAA__AAGGAGAAAA
 1516171819202122232425262728
_Input profile
AAGGTTCCGGGGAGCTCCCCTTCTCCAG
1._RUQ_1634
___CCCCGG_CCAAGGGGCTCCAA
2._GC-03-030-3-09
AAGGCCCCCCGG_CCAAGGGGCTCCAA
3._IMC_14
AAGGCCCCCCGG_CCAAGGGGCTCCAA
4._GC-03-030-3-09
AAGGCCCCCCGG_CCAAGGGGCTCCAA
5._GC-03-030-3-09
AAGGCCCCCCGG_CCAAGGGGCTCCAA
6._IMC_14
AAGGCCCCCCGG_CCAAGGGGCTCCAA
7._IMC_14
AAGGCCCCCCGG_CCAAGGGGCTCCAA
8._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
9._IMC_14
AAGGCCCCCCGG_CCAAGGGGCTCCAA
10._GC-03-030-3-09
AAGGCCCCCCGG_CCAAGGGGCTCCAA
11._GC-03-030-3-09
AAGGCCCCCCGG_CCAAGGGGCTCCAA
12._GC-03-030-3-09
AAGGCCCCCCGG_CCAAGGGGCTCCAA
13._IMC_14
AAGGCCCCCCGG_CCAAGGGGCTCCAA
14._IMC_14
AAGGCCCCCCGG_CCAAGGGGCTCCAA
15._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
16._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
17._GC-03-030-3-09
AAGGCCCCCCGGAACCAAGGGGCTCCAA
18._GC-03-030-3-09
AAGGCCCCCCGGAACCAAGGGGCTCCAA
19._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
20._GC-03-030-3-09
AAGGCCCCCCGGAACCAAGGGGCTCCAA
21._GC-03-030-3-09
AAGGCCCCCCGGAACCAAGGGGCTCCAA
22._GC-03-030-3-09
AAGGCCCCCCGGAACCAAGGGGCTCCAA
23._GC-03-030-3-09
AAGGCCCCCCGGAACCAAGGGGCTCCAA
24._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
25._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
26._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
27._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
28._GC-04-054-3-18
AAGGCCCCCCGGAACCAAGGGGCTCCAA
29._RUQ_1634
____CCGGAA_AAGG__CC_
30._GC-03-30-3-9
AAGGGGGGGGCC_GGAAGGCC_CC_
31._RUQ_1634
AAGGGGGGGGCC_GGAAGGCC_CC_
 2930313233343536373839   
_Input profile
GGAACTAACCACCTGTCCTTGGX_XX_XX_X
1._RUQ_1634
_AATTAGCGACCTGTAC__X_XX_XX_X
2._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
3._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
4._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
5._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
6._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
7._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
8._IMC_14
GGAATTAG_ACCTGTACTTGGX_XX_XX_X
9._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
10._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
11._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
12._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
13._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
14._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
15._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
16._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
17._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
18._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
19._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
20._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
21._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
22._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
23._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
24._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
25._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
26._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
27._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
28._GC-04-054-3-18
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
29._RUQ_1634
___AG____AC__X_XX_XX_X
30._GC-03-30-3-9
GGAAAAAGCGACAGACACTTGGX_XX_XX_X
31._RUQ_1634
GGAAAAAGCGACAGACACTTGGX_XX_XX_X

Input profile: IMC_14 RUQ_1634

 
 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._IMC_14 RUQ_1634

63 %
23 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._IMC_14 GC-03-030-3-09

62.9 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._IMC_14

62.9 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

4._IMC_14 GC-03-030-3-09

62.5 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._IMC_14 GC-03-030-3-09

62.5 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._IMC_14

62.5 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

7._IMC_14

62.5 %
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

8._IMC_14

62.2 %
37 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

9._IMC_14

60.8 %
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

10._IMC_14 GC-03-030-3-09

60.8 %
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

11._IMC_14 GC-03-030-3-09

60.5 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._IMC_14 GC-03-030-3-09

60.5 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._IMC_14

60.5 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

14._IMC_14

60.5 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

15._IMC_14

60.5 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

16._IMC_14

60.5 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

17._IMC_14 GC-03-030-3-09

60.5 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

18._IMC_14 GC-03-030-3-09

60.5 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

19._IMC_14

60.3 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

20._IMC_14 GC-03-030-3-09

60.3 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

21._IMC_14 GC-03-030-3-09

60.3 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

22._IMC_14 GC-03-030-3-09

60.3 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

23._IMC_14 GC-03-030-3-09

60.3 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

24._IMC_14

60.3 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

25._IMC_14

60.3 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

26._IMC_14

60.3 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

27._IMC_14

60.3 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

28._IMC_14 GC-04-054-3-18

60.3 %
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

29._IMC_14 RUQ_1634

41.7 %
12 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

30._IMC_14 GC-03-30-3-9

38.2 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 9, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._IMC_14 RUQ_1634

38.2 %
34 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1442 4TcSNP1414 5TcSNP1350
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25